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1

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

Kenneth J. Livak, Thomas D. Schmittgen

Journal:

Year:

2001

Language:

english

File:

PDF, 714 KB

english, 2001

2

Analyzing real-time PCR data by the comparative CT method

Schmittgen, Thomas D, Livak, Kenneth J

Journal:

Nature Protocols

Year:

2008

Language:

english

File:

PDF, 471 KB

english, 2008

3

DNA polymorphisms amplified by arbitrary primers are useful as genetic markers

Williams, John G.K., Kubelik, Anne R., Livak, Kenneth J., Rafalski, J.Antoni, Tingey, Scott V.

Journal:

Nucleic Acids Research

Year:

1990

Language:

english

File:

PDF, 6.01 MB

english, 1990

4

The world-wide distribution of allele frequencies at the human dopamine D4 receptor locus

Fong-Ming Chang, Judith R. Kidd, Kenneth J. Livak, Andrew J. Pakstis, K. K. Kidd

Journal:

Year:

1996

Language:

english

File:

PDF, 153 KB

english, 1996

5

Allelic discrimination using fluorogenic probes and the 5′ nuclease assay

Kenneth J. Livak

Journal:

Genetic Analysis: Biomolecular Engineering

Year:

1999

Language:

english

File:

PDF, 909 KB

english, 1999

6

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

Trapnell, Cole, Cacchiarelli, Davide, Grimsby, Jonna, Pokharel, Prapti, Li, Shuqiang, Morse, Michael, Lennon, Niall J, Livak, Kenneth J, Mikkelsen, Tarjei S, Rinn, John L

Journal:

Nature Biotechnology

Year:

2014

Language:

english

File:

PDF, 1.77 MB

english, 2014

7

Quantitative PCR based expression analysis on a nanoliter scale using polymer nano-well chips

Andreas Dahl, Marc Sultan, Alexander Jung, Regine Schwartz, Matthias Lange, Michael Steinwand, Kenneth J. Livak, Hans Lehrach, Lajos Nyarsik

Journal:

Biomedical Microdevices

Year:

2007

Language:

english

File:

PDF, 380 KB

english, 2007

8

Multiplexing RT-PCR for the detection of multiple miRNA species in small samples

Kaiqin Lao, Nan Lan Xu, Vivian Yeung, Caifu Chen, Kenneth J. Livak, Neil A. Straus

Journal:

Biochemical and Biophysical Research Communications

Year:

2006

Language:

english

File:

PDF, 292 KB

english, 2006

9

Single-cell gene expression analysis reveals genetic associations masked in whole-tissue experiments

Wills, Quin F, Livak, Kenneth J, Tipping, Alex J, Enver, Tariq, Goldson, Andrew J, Sexton, Darren W, Holmes, Chris

Journal:

Nature Biotechnology

Year:

2013

Language:

english

File:

PDF, 847 KB

english, 2013

10

DNA Fingerprinting by Sampled Sequencing

Sydney Brenner and Kenneth J. Livak

Journal:

Proceedings of the National Academy of Sciences

Year:

1989

Language:

english

File:

PDF, 1.01 MB

english, 1989

11

Alleles at the dopamine D4 receptor locus do not contribute to the genetic susceptibility to schizophrenia in a large Swedish kindred

Cathy L. Barr, James L. Kennedy, Jay B. Lichter, Hubert H. M. Van Tol, Lennart Wetterberg, Ken J. Livak, Kenneth K. Kidd

Journal:

American Journal of Medical Genetics Part A

Year:

1993

Language:

english

File:

PDF, 436 KB

english, 1993

12

A microtiter plate assay for determining apolipoprotein E genotype and discovery of a rare allele

Kenneth J. Livak, James W. Hainer

Journal:

Year:

1994

Language:

english

File:

PDF, 1011 KB

english, 1994

13

Half-site editing: An in vitro mutagenesis procedure for truncating a DNA fragment and introducing a new restriction site

Kenneth J. Livak, Erik A. Whitehorn

Journal:

Analytical Biochemistry

Year:

1986

Language:

english

File:

PDF, 830 KB

english, 1986

14

Methylation-dependent fragment separation: Direct detection of DNA methylation by capillary electrophoresis of PCR products from bisulfite-converted genomic DNA

Victoria L. Boyd, Kristina I. Moody, Achim E. Karger, Kenneth J. Livak, Gerald Zon, John W. Burns

Journal:

Analytical Biochemistry

Year:

2006

Language:

english

File:

PDF, 208 KB

english, 2006

15

Complete nucleotide sequence of the AIDS virus, HTLV-III

Ratner, Lee, Haseltine, William, Patarca, Roberto, Livak, Kenneth J., Starcich, Bruno, Josephs, Steven F., Doran, Ellen R., Rafalski, J. Antoni, Whitehorn, Erik A., Baumeister, Kirk

Journal:

Year:

1985

File:

PDF, 908 KB

1985

16

Echoes of D4 receptor repeats

Lichter, Jay B., Livak, Kenneth J., Rogers, Jeffery, Kennedy, James L., Van Tol, Hubert H. M.

Journal:

Year:

1992

File:

PDF, 139 KB

1992

17

Towards fully automated genome–wide polymorphism screening

Livak, Kenneth J., Marmaro, Jeffrey, Todd, John A.

Journal:

Nature Genetics

Year:

1995

File:

PDF, 208 KB

1995

18

A hypervariable segment in the human dopamine receptor D4 (DRD4) gene

Lichter, Jay B., Barr, Cathy L., Kennedy, James L., Van Tol, Hubert H.M., Kidd, Kenneth K., Livak, Kenneth J.

Journal:

Human Molecular Genetics

Year:

1993

Language:

english

File:

PDF, 4.70 MB

english, 1993

19

Real time PCR profiling of 330 human micro-RNAs

Kaiqin Lao, Nan Lan Xu, Yongming Andrew Sun, Kenneth J. Livak, Neil A. Straus

Journal:

Biotechnology Journal

Year:

2007

Language:

english

File:

PDF, 535 KB

english, 2007

20

Taking qPCR to a higher level: Analysis of CNV reveals the power of high throughput qPCR to enhance quantitative resolution

Suzanne Weaver, Simant Dube, Alain Mir, Jian Qin, Gang Sun, Ramesh Ramakrishnan, Robert C. Jones, Kenneth J. Livak

Journal:

Year:

2010

Language:

english

File:

PDF, 672 KB

english, 2010

21

Polymorphisms in the human DNA ligase I gene (LIG1) including a complex GT repeat

Kenneth J Livak, Wayne A Little, Sylvia L Stack, Thomas A Patterson

Journal:

Mutation Research/Mutation Research Genomics

Year:

1998

Language:

english

File:

PDF, 516 KB

english, 1998

22

Synthesis of Conformationally Preorganized and Cell-Permeable Guanidine-Based γ-Peptide Nucleic Acids (γGPNAs)

Sahu, Bichismita, Chenna, Venugopal, Lathrop, Kira L., Thomas, Sufi M., Zon, Gerald, Livak, Kenneth J., Ly, Danith H.

Journal:

Journal of Organic Chemistry

Year:

2009

Language:

english

File:

PDF, 1.01 MB

english, 2009

23

Pre-Clinical Validation of a Novel, Highly Sensitive Assay to Detect PML-RARα mRNA Using Real-Time Reverse-Transcription Polymerase Chain Reaction

Slack, James L., Bi, WanLi, Livak, Kenneth J., Beaubier, Nike, Yu, Min, Clark, Michelle, Kim, Soon H., Gallagher, Robert E., Willman, Cheryl L.

Journal:

The Journal of Molecular Diagnostics

Year:

2001

Language:

english

File:

PDF, 711 KB

english, 2001

24

The chromatin structure of specific genes: I. Evidence for higher order domains of defined DNA sequence

Wu, Carl, M. Bingham, Paul, Livak, Kenneth J., Holmgren, Robert, Elgin, Sarah C.R.

Journal:

Year:

1979

Language:

english

File:

PDF, 7.63 MB

english, 1979

25

The effects of hybrid ribosome-binding-site variants on the expression of human Interferon-β in Escherichia coli

Whitehorn, Erik A., Livak, Kenneth J., Petteway, Stephen R.

Journal:

Year:

1985

Language:

english

File:

PDF, 495 KB

english, 1985

26

Vacancies.

Whitehorn, Erik A., Livak, Kenneth J., Petteway, Stephen R.

Journal:

Year:

1906

Language:

english

File:

PDF, 398 KB

english, 1906

27

THE SLEEPING SICKNESS COMMISSION.

Whitehorn, Erik A., Livak, Kenneth J., Petteway, Stephen R.

Journal:

Year:

1925

Language:

english

File:

PDF, 196 KB

english, 1925

28

Studies of cloned sequences from four drosophila heat shock loci

Holmgren, Robert, Livak, Kenneth, Morimoto, Richard, Freund, Robert, Meselson, Matthew

Journal:

Year:

1979

Language:

english

File:

PDF, 12.47 MB

english, 1979

29

The U.N. Convention on the Law of the Sea and military interests in the Indian Ocean

Holmgren, Robert, Livak, Kenneth, Morimoto, Richard, Freund, Robert, Meselson, Matthew

Journal:

Deep Sea Research Part B. Oceanographic Literature Review

Year:

1986

Language:

english

File:

PDF, 181 KB

english, 1986

30

Methods for qPCR gene expression profiling applied to 1440 lymphoblastoid single cells

Livak, Kenneth J., Wills, Quin F., Tipping, Alex J., Datta, Krishnalekha, Mittal, Rowena, Goldson, Andrew J., Sexton, Darren W., Holmes, Chris C.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.02 MB

english, 2013

31

Sequence Organization and Transcription at Two Heat Shock Loci in Drosophila

Kenneth J. Livak, Robert Freund, Miriam Schweber, Pieter C. Wensink and Matthew Meselson

Journal:

Proceedings of the National Academy of Sciences

Year:

1978

Language:

english

File:

PDF, 1.54 MB

english, 1978

32

Critical role of IRF-5 in regulation of B-cell differentiation

Chunyang Lien, Chee-Mun Fang, David Huso, Ferenc Livak, Runqing Lu, Paula M. Pitha and Kenneth I. Berns

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.18 MB

english, 2010

33

Nucleotide sequence of the yeast ILV2 gene which encodes acetolactate synthase

Falco, S. Carl, Dumas, Kathy S., Livak, Kenneth J.

Journal:

Nucleic Acids Research

Year:

1985

Language:

english

File:

PDF, 1.23 MB

english, 1985

34

Mutation detection using nucleotide analogs that alter electrophoretic mobility

Kornher, J. Stephen, Livak, Kenneth J.

Journal:

Nucleic Acids Research

Year:

1989

Language:

english

File:

PDF, 306 KB

english, 1989

35

Methylation-Dependent Fragment Separation: Novel Analysis Of 5-Methyl Cytosine By Capillary Electrophoresis Of Amplified Dna Using Pcr Incorporation Of Chemically Modified Dctp

Boyd, Victoria L., Moody, Kristina I., Karger, Achim E., Livak, Kenneth J., Zon, Gerald, Burns, John W.

Journal:

Nucleosides Nucleotides & Nucleic Acids

Year:

2007

Language:

english

File:

PDF, 211 KB

english, 2007

36

Detection of single base differences using biotinylated nucleotides with very long linker arms

Livak, Kenneth J., Hobbs, Frank W., Zagursky, Robert

Journal:

Nucleic Acids Research

Year:

1992

Language:

english

File:

PDF, 1.88 MB

english, 1992

37

Polymorphism of the 3′ open reading frame of the virus associated with the acquired immune deficiency syndrome, human T-lymphotropic virus type III

Ratner, Lee, Starcich, Bruno, Josephs, Steven F., Hahn, Beatrice H., Reddy, E.Premkumanar, Livak, Kenneth J., Petteway, Stephen R., Pearson, Mark L., Haseltine, William A., Arya, Suresh K., Wong-Staal

Journal:

Nucleic Acids Research

Year:

1985

Language:

english

File:

PDF, 506 KB

english, 1985

38

Variability of Dopamine D4Receptor (DRD4) Gene Sequence Within and Among Nonhuman Primate Species

Kenneth J. Livak, Jeffrey Rogers and Jay B. Lichter

Journal:

Proceedings of the National Academy of Sciences

Year:

1995

Language:

english

File:

PDF, 279 KB

english, 1995

39

Effect of Altered pO₂ in the Aerial Part of Soybean on Symbiotic N₂ Fixation

Bruno Quebedeaux, Ulysses D. Havelka, Kenneth L. Livak and Ralph W. F. Hardy

Journal:

PLANT PHYSIOLOGY

Year:

1975

Language:

english

File:

PDF, 673 KB

english, 1975

40

CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq

Hashimshony, Tamar, Senderovich, Naftalie, Avital, Gal, Klochendler, Agnes, de Leeuw, Yaron, Anavy, Leon, Gennert, Dave, Li, Shuqiang, Livak, Kenneth J., Rozenblatt-Rosen, Orit, Dor, Yuval, Regev, Avi

Journal:

Year:

2016

Language:

english

File:

PDF, 2.41 MB

english, 2016

41

Multiplexed, targeted profiling of single-cell proteomes and transcriptomes in a single reaction

Genshaft, Alex S, Li, Shuqiang, Gallant, Caroline J., Darmanis, Spyros, Prakadan, Sanjay M., Ziegler, Carly G. K., Lundberg, Martin, Fredriksson, Simon, Hong, Joyce, Regev, Aviv, Livak, Kenneth J., La

Journal:

Year:

2016

Language:

english

File:

PDF, 1.59 MB

english, 2016

42

Transcriptional Networks in Single Perivascular Cells Sorted from Human Adipose Tissue Reveal a Hierarchy of Mesenchymal Stem Cells

Hardy, W. Reef, Moldovan, Nicanor I., Moldovan, Leni, Livak, Kenneth J., Datta, Krishna, Goswami, Chirayu, Corselli, Mirko, Traktuev, Dmitry O., Murray, Iain R., Péault, Bruno, March, Keith

Journal:

Year:

2017

Language:

english

File:

PDF, 827 KB

english, 2017

43

Deformation-induced transitional myofibroblasts contribute to compensatory lung growth

Bennett, Robert D., Ysasi, Alexandra B., Wagner, Willi L., Valenzuela, Cristian D., Tsuda, Akira, Pyne, Saumyadipta, Li, Shuqiang, Grimsby, Jonna, Pokharel, Prapti, Livak, Kenneth J., Ackermann, Maxim

Journal:

American journal of physiology. Lung cellular and molecular physiology

Year:

2017

Language:

english

File:

PDF, 2.85 MB

english, 2017

44

High-dimension single-cell analysis applied to cancer

Wang, Lili, Livak, Kenneth J., Wu, Catherine J.

Journal:

Molecular Aspects of Medicine

Year:

2017

Language:

english

File:

PDF, 1.41 MB

english, 2017

45

A practical solution for preserving single cells for RNA sequencing

Attar, Moustafa, Sharma, Eshita, Li, Shuqiang, Bryer, Claire, Cubitt, Laura, Broxholme, John, Lockstone, Helen, Kinchen, James, Simmons, Alison, Piazza, Paolo, Buck, David, Livak, Kenneth J., Bowden,

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 7.89 MB

english, 2018

46

Effect of the acyl-CoA: cholesterol acyltransferase inhibitor DuP 128 on cholesterol absorption and serum cholesterol in humans

Hainer, James W, Terry, J Greg, Connell, Jill M, Zyruk, Hanna, Jenkins, Rhonda M, Shand, Donna L, Gillies, Peter J, Livak, Kenneth J, Hunt, Thomas L, Crouse, John R

Journal:

Clinical Pharmacology & Therapeutics

Year:

1994

Language:

english

File:

PDF, 569 KB

english, 1994

47

Aligning Single-Cell Developmental and Reprogramming Trajectories Identifies Molecular Determinants of Myogenic Reprogramming Outcome

Cacchiarelli, Davide, Qiu, Xiaojie, Srivatsan, Sanjay, Manfredi, Anna, Ziller, Michael, Overbey, Eliah, Grimaldi, Antonio, Grimsby, Jonna, Pokharel, Prapti, Livak, Kenneth J., Li, Shuqiang, Meissner,

Journal:

Year:

2018

Language:

english

File:

PDF, 3.62 MB

english, 2018

48

SMARTer single cell total RNA sequencing

Verboom, Karen, Everaert, Celine, Bolduc, Nathalie, Livak, Kenneth J, Yigit, Nurten, Rombaut, Dries, Anckaert, Jasper, Lee, Simon, Venø, Morten T, Kjems, Jørgen, Speleman, Frank, Mestdagh, Pieter, Van

Journal:

Nucleic Acids Research

Year:

2019

Language:

english

File:

PDF, 1.31 MB

english, 2019

49

Single-Cell Transcriptional Profiling of Cells Derived From Regenerating Alveolar Ducts

Ysasi, Alexandra B., Bennett, Robert D., Wagner, Willi, Valenzuela, Cristian D., Servais, Andrew B., Tsuda, Akira, Pyne, Saumyadipta, Li, Shuqiang, Grimsby, Jonna, Pokharel, Prapti, Livak, Kenneth J.,

Journal:

Frontiers in Medicine

Year:

2020

File:

PDF, 3.15 MB

2020

50

Applying high-dimensional single-cell technologies to the analysis of cancer immunotherapy

Gohil, Satyen H., Iorgulescu, J. Bryan, Braun, David A., Keskin, Derin B., Livak, Kenneth J.

Journal:

Nature Reviews Clinical Oncology (formerly Nature Clinical Practice Oncology)

Year:

2020

File:

PDF, 2.26 MB

2020